Skip to content

G
gnv
Commit 0f07fe7e authored by Ariane Mora's avatar Ariane Mora
Browse files
Options

POM.xml and the front end resouces for the tool.

parents
Expand all Hide whitespace changes
Inline Side-by-side
Showing with 348 additions and 0 deletions
gnvweb/eneg/pom.xml 0 → 100644
View file @ 0f07fe7e
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.asr</groupId>
<artifactId>ENEG</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>war</packaging>
<name>eneg</name>
<description>ENEG Geneome network visualisation</description>
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
<version>1.5.4.RELEASE</version>
<relativePath/> <!-- lookup parent from repository -->
</parent>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<java.version>1.8</java.version>
</properties>
<dependencies>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-tomcat</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-thymeleaf</artifactId>
<version>1.5.4.RELEASE</version>
</dependency>
<dependency>
<groupId>com.asr</groupId>
<artifactId>bnkit</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>com.asr</groupId>
<artifactId>binfkit</artifactId>
<version>1.0</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<configuration>
<!-- this will get rid of version info from war file name -->
<finalName>${project.artifactId}</finalName>
</configuration>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>eneg-repo</id>
<url>file:///${project.basedir}/src/main/resources/eneg-repo</url>
</repository>
</repositories>
<distributionManagement>
<repository>
<uniqueVersion>false</uniqueVersion>
<id>eneg-repo</id>
<name>Repository</name>
<url>file:///${project.basedir}/src/main/resources/eneg-repo</url>
<layout>default</layout>
</repository>
</distributionManagement>
</project>
gnvweb/eneg/src/main/resources/public/css/vis/genome.css 0 → 100644
View file @ 0f07fe7e
/*circle {
fill-opacity: 0.2;
transition: fill-opacity 250ms linear;
}
circle.active {
stroke: #f00;
}*/
.area {
fill: steelblue;
/* fill: none; */
clip-path: url(#clip);
}
.overlay {
fill: none;
pointer-events: all;
}
.focus .area{
fill: none;
}
/* .circ circle {
fill: none;
stroke: steelblue;
} */
.line {
fill: none;
clip-path: url(#clip);
}
div.tooltip {
position: absolute;
text-align: left;
width: 100px;
height: 45px;
padding: 5px;
font: 12px sans-serif;
background: lightsteelblue;
border: 0px;
border-radius: 8px;
pointer-events: none;
}
gnvweb/eneg/src/main/resources/public/js/vis/ajaxData.js 0 → 100644
View file @ 0f07fe7e
function getNetworksFromBedFile() {
var data = {}
var url = window.location.pathname.split("?")[0];
$.ajax({
type : "GET",
url : url,
timeout : 100000,
data : {request: "status"},
success : function(data) {
console.log("SUCCESS: ", data);
run_networks_in_bed(data);
data['threeD_attr'] = set_up_3D_attr();
},
error : function(e) {
console.log("ERROR: ", e);
},
done : function(e) {
console.log("DONE");
}
});
}
\ No newline at end of file
gnvweb/eneg/src/main/resources/public/js/vis/genome.js 0 → 100644
View file @ 0f07fe7e
This diff is collapsed.
gnvweb/eneg/src/main/resources/public/js/vis/lib/crossfilter.min.js 0 → 100644
View file @ 0f07fe7e
!function(r){function n(r){return r}function t(r,n){for(var t=0,e=n.length,u=Array(e);e>t;++t)u[t]=r[n[t]];return u}function e(r){function n(n,t,e,u){for(;u>e;){var f=e+u>>>1;r(n[f])<t?e=f+1:u=f}return e}function t(n,t,e,u){for(;u>e;){var f=e+u>>>1;t<r(n[f])?u=f:e=f+1}return e}return t.right=t,t.left=n,t}function u(r){function n(r,n,t){for(var u=t-n,f=(u>>>1)+1;--f>0;)e(r,f,u,n);return r}function t(r,n,t){for(var u,f=t-n;--f>0;)u=r[n],r[n]=r[n+f],r[n+f]=u,e(r,1,f,n);return r}function e(n,t,e,u){for(var f,o=n[--u+t],i=r(o);(f=t<<1)<=e&&(e>f&&r(n[u+f])>r(n[u+f+1])&&f++,!(i<=r(n[u+f])));)n[u+t]=n[u+f],t=f;n[u+t]=o}return n.sort=t,n}function f(r){function n(n,e,u,f){var o,i,a,c,l=Array(f=Math.min(u-e,f));for(i=0;f>i;++i)l[i]=n[e++];if(t(l,0,f),u>e){o=r(l[0]);do(a=r(c=n[e])>o)&&(l[0]=c,o=r(t(l,0,f)[0]));while(++e<u)}return l}var t=u(r);return n}function o(r){function n(n,t,e){for(var u=t+1;e>u;++u){for(var f=u,o=n[u],i=r(o);f>t&&r(n[f-1])>i;--f)n[f]=n[f-1];n[f]=o}return n}return n}function i(r){function n(r,n,u){return(N>u-n?e:t)(r,n,u)}function t(t,e,u){var f,o=0|(u-e)/6,i=e+o,a=u-1-o,c=e+u-1>>1,l=c-o,v=c+o,s=t[i],h=r(s),d=t[l],p=r(d),g=t[c],y=r(g),m=t[v],x=r(m),b=t[a],A=r(b);h>p&&(f=s,s=d,d=f,f=h,h=p,p=f),x>A&&(f=m,m=b,b=f,f=x,x=A,A=f),h>y&&(f=s,s=g,g=f,f=h,h=y,y=f),p>y&&(f=d,d=g,g=f,f=p,p=y,y=f),h>x&&(f=s,s=m,m=f,f=h,h=x,x=f),y>x&&(f=g,g=m,m=f,f=y,y=x,x=f),p>A&&(f=d,d=b,b=f,f=p,p=A,A=f),p>y&&(f=d,d=g,g=f,f=p,p=y,y=f),x>A&&(f=m,m=b,b=f,f=x,x=A,A=f);var k=d,O=p,w=m,E=x;t[i]=s,t[l]=t[e],t[c]=g,t[v]=t[u-1],t[a]=b;var M=e+1,U=u-2,z=E>=O&&O>=E;if(z)for(var N=M;U>=N;++N){var C=t[N],S=r(C);if(O>S)N!==M&&(t[N]=t[M],t[M]=C),++M;else if(S>O)for(;;){var q=r(t[U]);{if(!(q>O)){if(O>q){t[N]=t[M],t[M++]=t[U],t[U--]=C;break}t[N]=t[U],t[U--]=C;break}U--}}}else for(var N=M;U>=N;N++){var C=t[N],S=r(C);if(O>S)N!==M&&(t[N]=t[M],t[M]=C),++M;else if(S>E)for(;;){var q=r(t[U]);{if(!(q>E)){O>q?(t[N]=t[M],t[M++]=t[U],t[U--]=C):(t[N]=t[U],t[U--]=C);break}if(U--,N>U)break}}}if(t[e]=t[M-1],t[M-1]=k,t[u-1]=t[U+1],t[U+1]=w,n(t,e,M-1),n(t,U+2,u),z)return t;if(i>M&&U>a){for(var F,q;(F=r(t[M]))<=O&&F>=O;)++M;for(;(q=r(t[U]))<=E&&q>=E;)--U;for(var N=M;U>=N;N++){var C=t[N],S=r(C);if(O>=S&&S>=O)N!==M&&(t[N]=t[M],t[M]=C),M++;else if(E>=S&&S>=E)for(;;){var q=r(t[U]);{if(!(E>=q&&q>=E)){O>q?(t[N]=t[M],t[M++]=t[U],t[U--]=C):(t[N]=t[U],t[U--]=C);break}if(U--,N>U)break}}}}return n(t,M,U+1)}var e=o(r);return n}function a(r){for(var n=Array(r),t=-1;++t<r;)n[t]=0;return n}function c(r,n){for(var t=r.length;n>t;)r[t++]=0;return r}function l(r,n){if(n>32)throw Error("invalid array width!");return r}function v(r,n){return function(t){var e=t.length;return[r.left(t,n,0,e),r.right(t,n,0,e)]}}function s(r,n){var t=n[0],e=n[1];return function(n){var u=n.length;return[r.left(n,t,0,u),r.left(n,e,0,u)]}}function h(r){return[0,r.length]}function d(){return null}function p(){return 0}function g(r){return r+1}function y(r){return r-1}function m(r){return function(n,t){return n+ +r(t)}}function x(r){return function(n,t){return n-r(t)}}function b(){function r(r){var n=E,t=r.length;return t&&(b=b.concat(r),z=F(z,E+=t),S.forEach(function(e){e(r,n,t)})),l}function e(){for(var r=A(E,E),n=[],t=0,e=0;E>t;++t)z[t]?r[t]=e++:n.push(t);N.forEach(function(r){r(0,[],n)}),q.forEach(function(n){n(r)});for(var u,t=0,e=0;E>t;++t)(u=z[t])&&(t!==e&&(z[e]=u,b[e]=b[t]),++e);for(b.length=e;E>e;)z[--E]=0}function o(r){function e(n,e,u){T=n.map(r),V=$(k(u),0,u),T=t(T,V);var f,o=_(T),i=o[0],a=o[1];if(W)for(f=0;u>f;++f)W(T[f],f)||(z[V[f]+e]|=Y);else{for(f=0;i>f;++f)z[V[f]+e]|=Y;for(f=a;u>f;++f)z[V[f]+e]|=Y}if(!e)return P=T,Q=V,tn=i,en=a,void 0;var c=P,l=Q,v=0,s=0;for(P=Array(E),Q=A(E,E),f=0;e>v&&u>s;++f)c[v]<T[s]?(P[f]=c[v],Q[f]=l[v++]):(P[f]=T[s],Q[f]=V[s++]+e);for(;e>v;++v,++f)P[f]=c[v],Q[f]=l[v];for(;u>s;++s,++f)P[f]=T[s],Q[f]=V[s]+e;o=_(P),tn=o[0],en=o[1]}function o(r,n,t){rn.forEach(function(r){r(T,V,n,t)}),T=V=null}function a(r){for(var n,t=0,e=0;E>t;++t)z[n=Q[t]]&&(t!==e&&(P[e]=P[t]),Q[e]=r[n],++e);for(P.length=e;E>e;)Q[e++]=0;var u=_(P);tn=u[0],en=u[1]}function c(r){var n=r[0],t=r[1];if(W)return W=null,G(function(r,e){return e>=n&&t>e}),tn=n,en=t,X;var e,u,f,o=[],i=[];if(tn>n)for(e=n,u=Math.min(tn,t);u>e;++e)z[f=Q[e]]^=Y,o.push(f);else if(n>tn)for(e=tn,u=Math.min(n,en);u>e;++e)z[f=Q[e]]^=Y,i.push(f);if(t>en)for(e=Math.max(n,en),u=t;u>e;++e)z[f=Q[e]]^=Y,o.push(f);else if(en>t)for(e=Math.max(tn,t),u=en;u>e;++e)z[f=Q[e]]^=Y,i.push(f);return tn=n,en=t,N.forEach(function(r){r(Y,o,i)}),X}function l(r){return null==r?B():Array.isArray(r)?j(r):"function"==typeof r?D(r):C(r)}function C(r){return c((_=v(w,r))(P))}function j(r){return c((_=s(w,r))(P))}function B(){return c((_=h)(P))}function D(r){return _=h,G(W=r),tn=0,en=E,X}function G(r){var n,t,e,u=[],f=[];for(n=0;E>n;++n)!(z[t=Q[n]]&Y)^!!(e=r(P[n],n))&&(e?(z[t]&=Z,u.push(t)):(z[t]|=Y,f.push(t)));N.forEach(function(r){r(Y,u,f)})}function H(r){for(var n,t=[],e=en;--e>=tn&&r>0;)z[n=Q[e]]||(t.push(b[n]),--r);return t}function I(r){for(var n,t=[],e=tn;en>e&&r>0;)z[n=Q[e]]||(t.push(b[n]),--r),e++;return t}function J(r){function t(n,t,e,u){function f(){++T===L&&(m=R(m,K<<=1),B=R(B,K),L=O(K))}var l,v,s,h,p,g,y=j,m=A(T,L),x=H,k=J,w=T,M=0,U=0;for(X&&(x=k=d),j=Array(T),T=0,B=w>1?F(B,E):A(E,L),w&&(s=(v=y[0]).key);u>U&&!((h=r(n[U]))>=h);)++U;for(;u>U;){for(v&&h>=s?(p=v,g=s,m[M]=T,(v=y[++M])&&(s=v.key)):(p={key:h,value:k()},g=h),j[T]=p;!(h>g||(B[l=t[U]+e]=T,z[l]&Z||(p.value=x(p.value,b[l])),++U>=u));)h=r(n[U]);f()}for(;w>M;)j[m[M]=T]=y[M++],f();if(T>M)for(M=0;e>M;++M)B[M]=m[B[M]];l=N.indexOf(V),T>1?(V=o,W=a):(!T&&$&&(T=1,j=[{key:null,value:k()}]),1===T?(V=i,W=c):(V=d,W=d),B=null),N[l]=V}function e(){if(T>1){for(var r=T,n=j,t=A(r,r),e=0,u=0;E>e;++e)z[e]&&(t[B[u]=B[e]]=1,++u);for(j=[],T=0,e=0;r>e;++e)t[e]&&(t[e]=T++,j.push(n[e]));if(T>1)for(var e=0;u>e;++e)B[e]=t[B[e]];else B=null;N[N.indexOf(V)]=T>1?(W=a,V=o):1===T?(W=c,V=i):W=V=d}else if(1===T){if($)return;for(var e=0;E>e;++e)if(z[e])return;j=[],T=0,N[N.indexOf(V)]=V=W=d}}function o(r,n,t){if(r!==Y&&!X){var e,u,f,o;for(e=0,f=n.length;f>e;++e)z[u=n[e]]&Z||(o=j[B[u]],o.value=H(o.value,b[u]));for(e=0,f=t.length;f>e;++e)(z[u=t[e]]&Z)===r&&(o=j[B[u]],o.value=I(o.value,b[u]))}}function i(r,n,t){if(r!==Y&&!X){var e,u,f,o=j[0];for(e=0,f=n.length;f>e;++e)z[u=n[e]]&Z||(o.value=H(o.value,b[u]));for(e=0,f=t.length;f>e;++e)(z[u=t[e]]&Z)===r&&(o.value=I(o.value,b[u]))}}function a(){var r,n;for(r=0;T>r;++r)j[r].value=J();for(r=0;E>r;++r)z[r]&Z||(n=j[B[r]],n.value=H(n.value,b[r]))}function c(){var r,n=j[0];for(n.value=J(),r=0;E>r;++r)z[r]&Z||(n.value=H(n.value,b[r]))}function l(){return X&&(W(),X=!1),j}function v(r){var n=D(l(),0,j.length,r);return G.sort(n,0,n.length)}function s(r,n,t){return H=r,I=n,J=t,X=!0,S}function h(){return s(g,y,p)}function k(r){return s(m(r),x(r),p)}function w(r){function n(n){return r(n.value)}return D=f(n),G=u(n),S}function M(){return w(n)}function U(){return T}function C(){var r=N.indexOf(V);return r>=0&&N.splice(r,1),r=rn.indexOf(t),r>=0&&rn.splice(r,1),r=q.indexOf(e),r>=0&&q.splice(r,1),S}var S={top:v,all:l,reduce:s,reduceCount:h,reduceSum:k,order:w,orderNatural:M,size:U,dispose:C,remove:C};nn.push(S);var j,B,D,G,H,I,J,K=8,L=O(K),T=0,V=d,W=d,X=!0,$=r===d;return arguments.length<1&&(r=n),N.push(V),rn.push(t),q.push(e),t(P,Q,0,E),h().orderNatural()}function K(){var r=J(d),n=r.all;return delete r.all,delete r.top,delete r.order,delete r.orderNatural,delete r.size,r.value=function(){return n()[0].value},r}function L(){nn.forEach(function(r){r.dispose()});var r=S.indexOf(e);return r>=0&&S.splice(r,1),r=S.indexOf(o),r>=0&&S.splice(r,1),r=q.indexOf(a),r>=0&&q.splice(r,1),M&=Z,B()}var P,Q,T,V,W,X={filter:l,filterExact:C,filterRange:j,filterFunction:D,filterAll:B,top:H,bottom:I,group:J,groupAll:K,dispose:L,remove:L},Y=~M&-~M,Z=~Y,$=i(function(r){return T[r]}),_=h,rn=[],nn=[],tn=0,en=0;return S.unshift(e),S.push(o),q.push(a),M|=Y,(U>=32?!Y:M&-(1<<U))&&(z=R(z,U<<=1)),e(b,0,E),o(b,0,E),X}function a(){function r(r,n){var t;if(!h)for(t=n;E>t;++t)z[t]||(a=c(a,b[t]))}function n(r,n,t){var e,u,f;if(!h){for(e=0,f=n.length;f>e;++e)z[u=n[e]]||(a=c(a,b[u]));for(e=0,f=t.length;f>e;++e)z[u=t[e]]===r&&(a=l(a,b[u]))}}function t(){var r;for(a=v(),r=0;E>r;++r)z[r]||(a=c(a,b[r]))}function e(r,n,t){return c=r,l=n,v=t,h=!0,s}function u(){return e(g,y,p)}function f(r){return e(m(r),x(r),p)}function o(){return h&&(t(),h=!1),a}function i(){var t=N.indexOf(n);return t>=0&&N.splice(t),t=S.indexOf(r),t>=0&&S.splice(t),s}var a,c,l,v,s={reduce:e,reduceCount:u,reduceSum:f,value:o,dispose:i,remove:i},h=!0;return N.push(n),S.push(r),r(b,0,E),u()}function c(){return E}var l={add:r,remove:e,dimension:o,groupAll:a,size:c},b=[],E=0,M=0,U=8,z=C(0),N=[],S=[],q=[];return arguments.length?r(arguments[0]):l}function A(r,n){return(257>n?C:65537>n?S:q)(r)}function k(r){for(var n=A(r,r),t=-1;++t<r;)n[t]=t;return n}function O(r){return 8===r?256:16===r?65536:4294967296}b.version="1.3.12",b.permute=t;var w=b.bisect=e(n);w.by=e;var E=b.heap=u(n);E.by=u;var M=b.heapselect=f(n);M.by=f;var U=b.insertionsort=o(n);U.by=o;var z=b.quicksort=i(n);z.by=i;var N=32,C=a,S=a,q=a,F=c,R=l;"undefined"!=typeof Uint8Array&&(C=function(r){return new Uint8Array(r)},S=function(r){return new Uint16Array(r)},q=function(r){return new Uint32Array(r)},F=function(r,n){if(r.length>=n)return r;var t=new r.constructor(n);return t.set(r),t},R=function(r,n){var t;switch(n){case 16:t=S(r.length);break;case 32:t=q(r.length);break;default:throw Error("invalid array width!")}return t.set(r),t}),r.crossfilter=b}("undefined"!=typeof exports&&exports||this);
\ No newline at end of file
gnvweb/eneg/src/main/resources/public/js/vis/lib/d3.min.js 0 → 100644
View file @ 0f07fe7e
This source diff could not be displayed because it is too large. You can view the blob instead.
gnvweb/eneg/src/main/resources/public/js/vis/lib/dc.min.js 0 → 100644
View file @ 0f07fe7e
This diff is collapsed.
gnvweb/eneg/src/main/resources/public/js/vis/lib/three.js 0 → 100644
View file @ 0f07fe7e
This diff is collapsed.
gnvweb/eneg/src/main/resources/public/js/vis/main.js 0 → 100644
View file @ 0f07fe7e
This diff is collapsed.
gnvweb/eneg/src/main/resources/public/js/vis/threeDVis.js 0 → 100644
View file @ 0f07fe7e
This diff is collapsed.
gnvweb/eneg/src/main/resources/templates/fragments/form.html 0 → 100644
View file @ 0f07fe7e
<!DOCTYPE html>
<html lang="en" xmlns:th="http://www.thymeleaf.org">
<body>
<div th:fragment="form">
<a name="reconstruct"></a>
<div class="content-section-b" th:if="${results == null}">
<div class="container-fluid">
<form id="gnv-form" class="col-sm-offset-2 col-sm-10" action="#" name="gnvForm" th:action="@{/}" th:object="${gnvForm}" method="post" enctype="multipart/form-data">
<div class="form-group row col-xs-12 col-sm-offset-2 col-sm-6 pad-top-bottom" style="padding-bottom:0px;">
<div class="form-group row col-xs-12">
<div class="input-group col-xs-12" data-toggle="popover" data-placement="left" title="Select BED ChiAPet data file" data-content="Select the ChiAPet data file in BED format, must have...?? (.BED).">
<div th:if="${message}">
<h2 th:text="${message}"/>
</div>
<div>
<form method="POST" enctype="multipart/form-data" action="/">
<table>
<tr><td>File to upload:</td><td><input type="file" name="file" /></td></tr>
<tr><td></td><td><input type="submit" value="Upload" /></td></tr>
</table>
</form>
</div>
<div>
<ul>
<li th:each="file : ${files}">
<a th:href="${file}" th:text="${file}" />
</li>
</ul>
</div>
</div>
</div>
</div>
<div class="form-group row col-sm-offset-1 col-sm-8 pad-top-bottom" style="padding-top:30px;"><button type="submit" name="submitGnv" class="btn btn-default col-xs-12" style="background-color: #C8D3BB;" id="submit-btn" onclick="javascript:displayLoad();">Perform reconstruction</button></div> </form>
</div>
</div>
</div>
</body>
</html>
\ No newline at end of file
gnvweb/eneg/src/main/resources/templates/fragments/results.html 0 → 100644
View file @ 0f07fe7e
<!DOCTYPE html>
<html lang="en" xmlns:th="http://www.thymeleaf.org">
<body>
<div id="results-container" th:fragment="results" th:if="${results == true}">
<a id="results-nav"></a>
<div class="content-section-b">
<div class="row">
<div id="heading">
<h2><span class="node-label">Root</span> <small><span class="infer-label" th:text="*{inferenceType}"></span> reconstruction </small></h2>
<hr class="h-divider"></hr>
</div>
</div>
<div id="progress" class="se-pre-con disable">
<div class="center-el">
<div id="progress-status" class="row jumbotron jumbotron-fluid" style="height: 10em; padding-top: 4em; background: none; background-color: transparent;">
<h2 class="col-xs-12 text-secondary"><small>please wait... </small><span id="status">0%</span></h2>
</div>
</div>
</div>
<div id="results" class="container-fluid" >
<div class="form-group row col-sm-offset-1 col-sm-6">
<div style="width:1200; height:100">
<!-- Contains the D3 genome vis. -->
<svg id="genomevis" width="1200" height="100"></svg>
</div>
<div style="width:1200; height:500; float: left">
<!-- Contains the D3 strand vis. -->
<svg id="strandvis" width="600" height="400"></svg>
<svg id="interactionvis" width="400" height="400"></svg>
</div>
<!-- Contains the 3D network vis. -->
<div id="container"></div>
<div style="display: none;">
<script type="text/javascript" th:inline="javascript">
/*<![CDATA[*/
$(document).ready(function () {
if (/*[[${networksInBedFile}]]*/ != "None") {
// Define the JSON (either get from a file in paste in).
var json = /*[[${networksInBedFile}]]*/;
// Draw the smaller version of the nodes that is in two D.
//parse_json_file(json);
getNetworksFromBedFile();
}
});
/*]]>*/
</script>
</div>
</div>
</div>
</div>
</div>
</body>
</html>
gnvweb/eneg/src/main/resources/templates/index.html 0 → 100644
View file @ 0f07fe7e
<!DOCTYPE html>
<html lang="en" xmlns:th="http://www.thymeleaf.org">
<head>
<meta charset="utf-8"></meta>
<meta http-equiv="X-UA-Compatible" content="IE=edge"></meta>
<meta name="viewport" content="width=device-width, initial-scale=1"></meta>
<title>ENEG Genome Network Visualisation</title>
<!-- Custom Fonts -->
<link rel="stylesheet" type="text/css" th:href="@{/css/font-awesome.min.css}"></link>
<!--<link href="https://fonts.googleapis.com/css?family=Lato:300,400,700,300italic,400italic,700italic" rel="stylesheet" type="text/css"></link>-->
<!-- HTML5 Shim and Respond.js IE8 support of HTML5 elements and media queries -->
<!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script>
<script src="https://oss.maxcdn.com/libs/respond.js/1.4.2/respond.min.js"></script>
<![endif]-->
<link rel="stylesheet" th:href="@{/css/bootstrap.css}"></link>
<link rel="stylesheet" th:href="@{/css/bootstrap-switch.min.css}"></link>
<link rel="stylesheet" th:href="@{/css/bootstrap_override.css}"></link>
<link rel="stylesheet" th:href="@{/css/asr.css}"></link>
<link rel="stylesheet" th:href="@{/css/vis/genome.css}"></link>
<script src="https://d3js.org/d3.v3.min.js"></script>
<script src="https://cdn.rawgit.com/eligrey/canvas-toBlob.js/f1a01896135ab378aa5c0118eadd81da55e698d8/canvas-toBlob.js"></script>
<script src="https://cdn.rawgit.com/eligrey/FileSaver.js/e9d941381475b5df8b7d7691013401e171014e89/FileSaver.min.js"></script>
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
<script src="https://code.jquery.com/jquery-2.2.4.min.js"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
<script src="http://cdnjs.cloudflare.com/ajax/libs/modernizr/2.8.2/modernizr.js"></script>
<script type="text/javascript" th:src="@{/js/bootstrap-switch.min.js}"></script>
<script type="text/javascript" th:src="@{/js/vis/lib/three.js}"></script>
<script type="text/javascript" th:src="@{/js/vis/lib/crossfilter.min.js}"></script>
<script type="text/javascript" th:src="@{/js/vis/lib/d3.min.js}"></script>
<script type="text/javascript" th:src="@{/js/vis/ajaxData.js}"> </script>
<script type="text/javascript" th:src="@{/js/vis/genome.js}"> </script>
<script type="text/javascript" th:src="@{/js/vis/main.js}"> </script>
<script type="text/javascript" th:src="@{/js/vis/threeDVis.js}"> </script>
</head>
<body class="container-fluid">
<div th:replace="fragments/nav :: nav"></div>
<!-- Header -->
<div th:replace="fragments/header :: header"></div>
<!-- Page Content -->
<!-- Reconstruction Form Section -->
<div th:replace="fragments/form :: form"></div>
<!-- Reconstruction Results Section -->
<div th:replace="fragments/results :: results"></div>
<!-- Error Section -->
<div th:replace="fragments/errors :: errors"></div>
<!-- Progress Modal -->
<div th:replace="fragments/progress :: progress"></div>
<!-- About Section -->
<div th:replace="fragments/about :: about"></div>
<!-- Footer -->
<div th:replace="fragments/footer :: footer"></div>
</body>
</html>
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment