Removed unused function.

gnvweb/eneg/src/main/java/com/gnv/eneg/GNV.java

@@ -92,11 +92,6 @@ public class GNV {
         bedPairFilePath = directory + file.getOriginalFilename();
         pairAPI = new PairAPI(bedPairFilePath);
 
-        // Write the JSON to a file that will be read by the application.
-        // It is too large to add as a model attribute.
-        pairAPI.writeJSONArrToLocalFile(pairAPI.getNetworksInUploadedBedFile(), "networksInBedFile.JSON");
-
-
         // Set the results flag to be true to show the results page.
         redirectAttributes.addFlashAttribute("results", true);
 

gnvweb/eneg/src/main/java/com/gnv/eneg/PairAPI.java

@@ -47,22 +47,6 @@ public class PairAPI {
     }
 
 
-    /**
-     * Writes the JSON object to a local file.
-     *
-     * Returns the path of the file.
-     */
-    public static String writeJSONArrToLocalFile(JSONArray jsonArr, String fileName) {
-        try {
-            BufferedWriter write = new BufferedWriter(new FileWriter(dataPath + fileName));
-            write.write(jsonArr.toString());
-            write.close();
-        } catch (IOException ex) {
-            System.out.println("Issue with the file.");
-        }
-        return dataPath + fileName;
-    }
-
     /**
      * Gets the networks within a users uploaded bed file.
      *

gnvweb/eneg/src/main/resources/public/js/vis/genome.js

@@ -8,11 +8,6 @@ var genome_attr = {
     data: {
         genome_data: [],
         network_data: [],
-        path: "/home/ariane/Documents/bodenlab/binfkit/data/json_genome_files/",
-        file_end: "-human-genome-ucsc-23_11_2017.JSON",
-        chrom_start_end: "01ChromStartEnds-human-genome-ucsc-23_11_2017.JSON",
-        chrom_info: "02ChromInfoByName-human-genome-ucsc-23_11_2017.JSON",
-        exStartEnds: "03ExStartEnds-human-genome-ucsc-23_11_2017.JSON",
         genes: "output_ucsc_refseq_genome_ucsc_GRCh37-hg19.tsv",
         networks: "networksInBedFile.JSON"
     },